FlyAtlas 2 – Gene
For a particular Drosophila gene, find the pattern of expression in different tissues.
Gene Symbol (e.g. vkg) — start typing, then select from the autosuggest menu
Gene Name (e.g. viking)
Annotation Symbol (e.g. CG16858)
Gene ID (e.g. FBgn0016075)
Gene Name (e.g. viking)
Annotation Symbol (e.g. CG16858)
Gene ID (e.g. FBgn0016075)
Gene:
| Adult Male | Adult Female | Male v. Female | Larval | |||||
|---|---|---|---|---|---|---|---|---|
| Tissue | FPKM | Enrichment | FPKM | Enrichment | M/F | p value | FPKM | Enrichment |
| Head | 3.5 ± 0.5 | 1.7 | 3.3 ± 0.5 | 1.0 | 1.07 | n.s. | ||
| Eye | 5.0 ± 0.5 | 2.4 | 4.7 ± 0.2 | 1.4 | 1.08 | n.s. | ||
| Brain / CNS | 4.2 ± 0.3 | 2.0 | 4.4 ± 0.2 | 1.3 | 0.96 | n.s. | 3.9 ± 0.6 | 1.7 |
| Thoracicoabdominal ganglion | 4.2 ± 0.4 | 2.1 | 4.1 ± 0.2 | 1.3 | 1.03 | n.s. | ||
| Crop | 2.9 ± 0.4 | 1.4 | 2.8 ± 0.9 | 0.8 | 1.04 | n.s. | ||
| Midgut | 2.8 ± 0.9 | 1.3 | 2.3 ± 0.1 | 0.7 | 1.22 | n.s. | 2.8 ± 0.2 | 1.3 |
| Hindgut | 2.3 ± 0.2 | 1.1 | 2.4 ± 0.1 | 0.7 | 0.98 | n.s. | 1.5 ± 0.9 | 0.7 |
| Malpighian Tubules | 1.9 ± 0.4 | 0.9 | 2.2 ± 0.3 | 0.7 | 0.91 | n.s. | 1.6 ± 0.0 | 0.7 |
| Fat body | 1.2 ± 0.3 | 0.6 | 1.5 ± 0.3 | 0.4 | 1.00 | n.s. | 4.0 ± 0.5 | 1.8 |
| Salivary gland | 3.6 ± 0.1 | 1.7 | 2.6 ± 0.6 | 0.8 | 1.41 | n.s. | 2.7 ± 0.3 | 1.2 |
| Heart | pending | — | pending | — | ||||
| Trachea | 2.2 ± 0.2 | 1.0 | ||||||
| Ovary | 3.8 ± 0.4 | 1.1 | ||||||
| Virgin Spermatheca | 1.1 ± 0.2 | 0.3 | ||||||
| Mated Spermatheca | 1.4 ± 0.2 | 0.4 | ||||||
| Testis | 4.8 ± 0.7 | 2.3 | ||||||
| Accessory glands | 3.8 ± 0.7 | 1.8 | ||||||
| Carcass | 2.0 ± 0.1 | 0.9 | 2.4 ± 0.2 | 0.7 | 0.84 | p < 0.05 | 1.1 ± 0.2 | 0.5 |
| Rectal pad | 2.4 ± 0.2 | 1.2 | 2.0 ± 0.0 | 0.6 | 1.20 | n.s. | ||
| Whole body | 2.1 ± 0.2 | 3.3 ± 0.2 | 0.63 | p < 0.01 | 2.2 ± 0.6 | |||
Rotate to see Transcript Table
| Transcript | Male | Female | Larval | |||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Name | ID | Hd | Ey | Br | Tg | Cr | Mg | Hg | Tu | Fb | Sg | Ht | Ts | Ag | Cs | Rp | Hd | Ey | Br | Tg | Cr | Mg | Hg | Tu | Fb | Sg | Ht | Ov | Vs | Ms | Cs | Rp | Ns | Mg | Hg | Tu | Fb | Sg | Tr | Cs |
| RA | FBtr0072841 | |||||||||||||||||||||||||||||||||||||||
Tissue Comparability
Adult fat body and spermatheca were sequenced using a different chemistry from the other tissues (see Docs). The results for these tissues are comparable within this group, but not with other tissues. The identification of their individual transcripts is also less rigorous.
Adult fat body and spermatheca were sequenced using a different chemistry from the other tissues (see Docs). The results for these tissues are comparable within this group, but not with other tissues. The identification of their individual transcripts is also less rigorous.