FlyAtlas 2 – Gene
For a particular Drosophila gene, find the pattern of expression in different tissues.
Gene Symbol (e.g. vkg) — start typing, then select from the autosuggest menu
Gene Name (e.g. viking)
Annotation Symbol (e.g. CG16858)
Gene ID (e.g. FBgn0016075)
Gene Name (e.g. viking)
Annotation Symbol (e.g. CG16858)
Gene ID (e.g. FBgn0016075)
Gene:
Symbol
Arc1
Arc1
Name
Activity-regulated cytoskeleton associated protein 1
Activity-regulated cytoskeleton associated protein 1
Annotation Symbol
CG12505
CG12505
| Adult Male | Adult Female | Male v. Female | Larval | |||||
|---|---|---|---|---|---|---|---|---|
| Tissue | FPKM | Enrichment | FPKM | Enrichment | M/F | p value | FPKM | Enrichment |
| Head | 68 ± 3.5 | 0.5 | 85 ± 11 | 1.6 | 0.81 | n.s. | ||
| Eye | 40 ± 2.2 | 0.3 | 46 ± 6.6 | 0.9 | 0.86 | n.s. | ||
| Brain / CNS | 55 ± 8.0 | 0.4 | 70 ± 8.9 | 1.3 | 0.79 | n.s. | 32 ± 5.6 | 0.1 |
| Thoracicoabdominal ganglion | 251 ± 47 | 1.8 | 248 ± 57 | 4.6 | 1.01 | n.s. | ||
| Crop | 118 ± 6.6 | 0.8 | 115 ± 15 | 2.1 | 1.02 | n.s. | ||
| Midgut | 883 ± 144 | 6.2 | 753 ± 211 | 14 | 1.17 | n.s. | 968 ± 14 | 2.2 |
| Hindgut | 115 ± 32 | 0.8 | 81 ± 4.6 | 1.5 | 1.42 | n.s. | 221 ± 87 | 0.5 |
| Malpighian Tubules | 45 ± 5.2 | 0.3 | 17 ± 2.1 | 0.3 | 2.7 | p < 0.01 | 77 ± 14 | 0.2 |
| Fat body | 39 ± 4.6 | 0.3 | 31 ± 4.0 | 0.6 | 1.27 | n.s. | 18 ± 5.6 | 0.0 |
| Salivary gland | 83 ± 6.2 | 0.6 | 25 ± 3.6 | 0.5 | 3.2 | n.s. | 149 ± 27 | 0.3 |
| Heart | pending | — | pending | — | ||||
| Trachea | 302 ± 33 | 0.7 | ||||||
| Ovary | 17 ± 2.6 | 0.3 | ||||||
| Virgin Spermatheca | 44 ± 7.8 | 0.8 | ||||||
| Mated Spermatheca | 78 ± 2.4 | 1.4 | ||||||
| Testis | 67 ± 3.0 | 0.5 | ||||||
| Accessory glands | 282 ± 9.8 | 2.0 | ||||||
| Carcass | 114 ± 23 | 0.8 | 108 ± 68 | 2.0 | 1.05 | n.s. | 352 ± 42 | 0.8 |
| Rectal pad | 89 ± 1.7 | 0.6 | 116 ± 17 | 2.1 | 0.77 | n.s. | ||
| Whole body | 142 ± 19 | 54 ± 8.3 | 2.6 | p < 0.01 | 443 ± 74 | |||
Rotate to see Transcript Table
| Transcript | Male | Female | Larval | |||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Name | ID | Hd | Ey | Br | Tg | Cr | Mg | Hg | Tu | Fb | Sg | Ht | Ts | Ag | Cs | Rp | Hd | Ey | Br | Tg | Cr | Mg | Hg | Tu | Fb | Sg | Ht | Ov | Vs | Ms | Cs | Rp | Ns | Mg | Hg | Tu | Fb | Sg | Tr | Cs |
| RA | FBtr0087560 | |||||||||||||||||||||||||||||||||||||||
Tissue Comparability
Adult fat body and spermatheca were sequenced using a different chemistry from the other tissues (see Docs). The results for these tissues are comparable within this group, but not with other tissues. The identification of their individual transcripts is also less rigorous.
Adult fat body and spermatheca were sequenced using a different chemistry from the other tissues (see Docs). The results for these tissues are comparable within this group, but not with other tissues. The identification of their individual transcripts is also less rigorous.