FlyAtlas 2 – Gene
For a particular Drosophila gene, find the pattern of expression in different tissues.
Gene Symbol (e.g. vkg) — start typing, then select from the autosuggest menu
Gene Name (e.g. viking)
Annotation Symbol (e.g. CG16858)
Gene ID (e.g. FBgn0016075)
Transcript ID (e.g. FBtr0079036)
Gene Name (e.g. viking)
Annotation Symbol (e.g. CG16858)
Gene ID (e.g. FBgn0016075)
Transcript ID (e.g. FBtr0079036)
Gene:
Symbol
Upf1
Upf1
Name
Upf1 RNA helicase
Upf1 RNA helicase
Annotation Symbol
CG1559
CG1559
| Adult Male | Adult Female | Male v. Female | Larval | |||||
|---|---|---|---|---|---|---|---|---|
| Tissue | FPKM | Enrichment | FPKM | Enrichment | M/F | p value | FPKM | Enrichment |
| Head | 4.0 ± 0.4 | 0.9 | 4.7 ± 0.6 | 0.7 | 0.84 | n.s. | ||
| Eye | 5.2 ± 0.1 | 1.2 | 5.2 ± 0.2 | 0.7 | 1.00 | n.s. | ||
| Brain / CNS | 4.9 ± 0.3 | 1.1 | 5.0 ± 0.3 | 0.7 | 0.98 | n.s. | 6.7 ± 0.4 | 2.2 |
| Thoracicoabdominal ganglion | 4.0 ± 0.1 | 0.9 | 4.2 ± 0.3 | 0.6 | 0.95 | n.s. | ||
| Crop | 4.6 ± 0.2 | 1.0 | 3.9 ± 1.3 | 0.5 | 1.20 | n.s. | ||
| Midgut | 5.3 ± 0.8 | 1.2 | 3.8 ± 0.4 | 0.5 | 1.41 | n.s. | 3.4 ± 0.4 | 1.1 |
| Hindgut | 3.8 ± 0.3 | 0.9 | 4.1 ± 0.4 | 0.6 | 0.92 | n.s. | 2.8 ± 0.7 | 1.0 |
| Malpighian Tubules | 4.8 ± 0.8 | 1.1 | 5.2 ± 0.7 | 0.7 | 0.91 | n.s. | 3.4 ± 0.4 | 1.1 |
| Rectal pad | 3.0 ± 0.3 | 0.7 | 3.1 ± 0.3 | 0.4 | 0.96 | n.s. | ||
| Salivary gland | 4.7 ± 0.0 | 1.1 | 5.2 ± 0.7 | 0.7 | 0.90 | n.s. | 8.4 ± 0.7 | 2.8 |
| Fat body | 3.2 ± 0.7 | 0.7 | 3.8 ± 0.2 | 0.5 | 0.85 | n.s. | 7.3 ± 0.4 | 2.4 |
| Heart | 4.0 ± 0.7 | 0.9 | 7.5 ± 4.1 | 1.1 | 0.54 | n.s. | ||
| Trachea | 6.0 ± 0.4 | 2.0 | ||||||
| Ovary | 8.3 ± 0.3 | 1.2 | ||||||
| Virgin Spermatheca | 5.9 ± 0.5 | 0.8 | ||||||
| Mated Spermatheca | 6.5 ± 1.7 | 0.9 | ||||||
| Testis | 12 ± 1.2 | 2.7 | ||||||
| Accessory glands | 11 ± 2.3 | 2.5 | ||||||
| Carcass | 3.4 ± 0.4 | 0.8 | 4.6 ± 0.1 | 0.6 | 0.74 | p < 0.05 | 4.0 ± 0.1 | 1.4 |
| Garland cells | 5.9 ± 0.4 | 2.0 | ||||||
| Whole body | 4.4 ± 0.3 | 7.1 ± 0.6 | 0.62 | p < 0.01 | 3.0 ± 0.3 | |||
Rotate to see Transcript Table
| Transcript | Male | Female | Larval | ||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Name | ID | Hd | Ey | Br | Tg | Cr | Mg | Hg | Tu | Rp | Sg | Fb | Ht | Ts | Ag | Cs | Hd | Ey | Br | Tg | Cr | Mg | Hg | Tu | Rp | Sg | Fb | Ht | Ov | Vs | Ms | Cs | Ns | Mg | Hg | Tu | Sg | Fb | Tr | Cs | Ga |
| RA | FBtr0073596 | ||||||||||||||||||||||||||||||||||||||||
| RB | FBtr0342744 | ||||||||||||||||||||||||||||||||||||||||
*Tissue Comparability:
See Docs for info on the chemistry used to sequence different tissues.
See Docs for info on the chemistry used to sequence different tissues.