FlyAtlas 2 – Gene
For a particular Drosophila gene, find the pattern of expression in different tissues.
Gene Symbol (e.g. vkg) — start typing, then select from the autosuggest menu
Gene Name (e.g. viking)
Annotation Symbol (e.g. CG16858)
Gene ID (e.g. FBgn0016075)
Transcript ID (e.g. FBtr0079036)
Gene Name (e.g. viking)
Annotation Symbol (e.g. CG16858)
Gene ID (e.g. FBgn0016075)
Transcript ID (e.g. FBtr0079036)
Gene:
Symbol
Shmt
Shmt
Name
Serine hydroxymethyl transferase
Serine hydroxymethyl transferase
Annotation Symbol
CG3011
CG3011
Paralogues
No paralogues
No paralogues
| Adult Male | Adult Female | Male v. Female | Larval | |||||
|---|---|---|---|---|---|---|---|---|
| Tissue | FPKM | Enrichment | FPKM | Enrichment | M/F | p value | FPKM | Enrichment |
| Head | 46 ± 9.8 | 1.2 | 36 ± 21 | 1.2 | 1.29 | n.s. | ||
| Eye | 67 ± 26 | 1.7 | 53 ± 2.0 | 1.8 | 1.25 | n.s. | ||
| Brain / CNS | 7.0 ± 1.6 | 0.2 | 12 ± 2.6 | 0.4 | 0.57 | p < 0.05 | 15 ± 3.1 | 0.3 |
| Thoracicoabdominal ganglion | 26 ± 0.0 | 0.7 | 22 ± 6.1 | 0.7 | 1.22 | n.s. | ||
| Crop | 33 ± 14 | 0.8 | 38 ± 12 | 1.3 | 0.86 | n.s. | ||
| Midgut | 19 ± 1.2 | 0.5 | 11 ± 2.2 | 0.4 | 1.64 | p < 0.05 | 67 ± 11 | 1.1 |
| Hindgut | 9.1 ± 1.7 | 0.2 | 12 ± 2.5 | 0.4 | 0.75 | n.s. | 18 ± 7.4 | 0.3 |
| Malpighian Tubules | 12 ± 2.4 | 0.3 | 13 ± 3.4 | 0.5 | 0.90 | n.s. | 11 ± 2.3 | 0.2 |
| Rectal pad | 10 ± 1.2 | 0.3 | 9.6 ± 1.8 | 0.3 | 1.08 | n.s. | ||
| Salivary gland | 31 ± 1.2 | 0.8 | 15 ± 3.1 | 0.5 | 2.0 | n.s. | 27 ± 2.6 | 0.5 |
| Fat body | 96 ± 14 | 2.4 | 37 ± 3.3 | 1.3 | 2.5 | p < 0.05 | 216 ± 51 | 3.7 |
| Heart | 217 ± 75 | 5.5 | 57 ± 9.4 | 1.9 | 3.8 | n.s. | ||
| Trachea | 22 ± 1.4 | 0.4 | ||||||
| Ovary | 29 ± 2.0 | 1.0 | ||||||
| Virgin Spermatheca | 14 ± 4.0 | 0.5 | ||||||
| Mated Spermatheca | 27 ± 7.3 | 0.9 | ||||||
| Testis | 10 ± 1.5 | 0.3 | ||||||
| Accessory glands | 50 ± 2.0 | 1.3 | ||||||
| Carcass | 87 ± 19 | 2.2 | 68 ± 28 | 2.3 | 1.29 | n.s. | 15 ± 3.4 | 0.3 |
| Garland cells | 24 ± 8.4 | 0.4 | ||||||
| Whole body | 39 ± 1.9 | 29 ± 12 | 1.34 | n.s. | 58 ± 12 | |||
Rotate to see Transcript Table
| Transcript | Male | Female | Larval | ||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Name | ID | Hd | Ey | Br | Tg | Cr | Mg | Hg | Tu | Rp | Sg | Fb | Ht | Ts | Ag | Cs | Hd | Ey | Br | Tg | Cr | Mg | Hg | Tu | Rp | Sg | Fb | Ht | Ov | Vs | Ms | Cs | Ns | Mg | Hg | Tu | Sg | Fb | Tr | Cs | Ga |
| RA | FBtr0070827 | ||||||||||||||||||||||||||||||||||||||||
| RB | FBtr0290235 | ||||||||||||||||||||||||||||||||||||||||
| RC | FBtr0345317 | ||||||||||||||||||||||||||||||||||||||||
*Tissue Comparability:
See Docs for info on the chemistry used to sequence different tissues.
See Docs for info on the chemistry used to sequence different tissues.