FlyAtlas 2 – Gene
For a particular Drosophila gene, find the pattern of expression in different tissues.
 
Gene Symbol (e.g. vkg) — start typing, then select from the autosuggest menu
Gene Name (e.g. viking)
Annotation Symbol (e.g. CG16858)
Gene ID (e.g. FBgn0016075)
Transcript ID (e.g. FBtr0079036)

Gene:

Symbol
XNP
Annotation Symbol
CG4548
FlyBase ID
FBgn0039338
Paralogues
Paralogues(s)
link out
SDs   Whole Body   Male v. Female
Gene FPKMs and Enrichments 
Adult MaleAdult FemaleMale v. FemaleLarval
TissueFPKMEnrichmentFPKMEnrichmentM/Fp valueFPKMEnrichment
Head9.5 ± 0.71.28.5 ± 1.60.71.11n.s.  
Eye7.3 ± 0.40.96.5 ± 0.10.51.12n.s.  
Brain / CNS16 ± 1.52.114 ± 2.11.21.13n.s.22 ± 1.74.0
Thoracicoabdominal ganglion7.7 ± 0.11.07.6 ± 0.20.61.01n.s.  
Crop7.1 ± 0.50.94.8 ± 1.60.41.47n.s.  
Midgut6.4 ± 0.30.84.8 ± 0.20.41.33p < 0.014.9 ± 0.30.9
Hindgut6.3 ± 0.50.87.3 ± 0.30.60.86p < 0.056.0 ± 1.51.1
Malpighian Tubules8.8 ± 0.51.18.4 ± 0.50.71.06n.s.5.8 ± 1.21.0
Rectal pad6.6 ± 0.50.84.9 ± 0.70.41.34n.s.  
Salivary gland7.0 ± 0.10.95.8 ± 0.80.51.21n.s.8.1 ± 0.21.5
Fat body5.3 ± 0.60.74.7 ± 0.60.41.14n.s.6.2 ± 0.71.1
Heart7.9 ± 1.01.09.3 ± 1.80.80.85n.s.  
Trachea      11 ± 0.62.0
Ovary  14 ± 0.71.1    
Virgin Spermatheca  6.9 ± 0.50.6    
Mated Spermatheca  6.3 ± 0.50.5    
Testis15 ± 3.11.9      
Accessory glands8.6 ± 0.21.1      
Carcass7.9 ± 0.91.07.3 ± 0.20.61.08n.s.7.0 ± 1.91.3
Garland cells      7.0 ± 1.01.3
Whole body7.7 ± 0.812 ± 2.50.64n.s.5.5 ± 0.7
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Rotate to see Transcript Table
TranscriptMaleFemaleLarval
NameIDHdEyBrTgCrMgHgTuRpSgFbHtTsAgCsHdEyBrTgCrMgHgTuRpSgFbHtOvVsMsCsNsMgHgTuSgFbTrCsGa
RAFBtr0084837
RDFBtr0344719
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*Tissue Comparability: See Docs for info on the chemistry used to sequence different tissues.
WARNING: Transcript Ambiguity for this Gene!
Because FlyBase assigns a unique transcript name and identifier for each unique protein, the rare cases in which such proteins result from alternative translation of the same mRNA give rise to situations in which there are two or more different identifiers for the same physical transcript. RNAseq analysis can only deal with unique sequences, and in such cases arbitrarily assigns the data from a sequence to one of the different transcript identifiers. The result is that some named transcripts will be missing, or data for some transcripts will actually include that for others. In the case of gene FBgn0039338 the situation is:

No data for FBtr0084838 — included in FBtr0344719: Alternative Start codons in same reading frame

No data for FBtr0344718 — included in FBtr0084837: Alternative Start codons in same reading frame

*** More extensive information about transcript ambiguity and its implications can be found in the Docs ***