FlyAtlas 2 – Gene
For a particular Drosophila gene, find the pattern of expression in different tissues.
Gene Symbol (e.g. vkg) — start typing, then select from the autosuggest menu
Gene Name (e.g. viking)
Annotation Symbol (e.g. CG16858)
Gene ID (e.g. FBgn0016075)
Transcript ID (e.g. FBtr0079036)
Gene Name (e.g. viking)
Annotation Symbol (e.g. CG16858)
Gene ID (e.g. FBgn0016075)
Transcript ID (e.g. FBtr0079036)
Gene:
Symbol
Rab3-GEF
Rab3-GEF
Name
Rab3 GDP-GTP exchange factor
Rab3 GDP-GTP exchange factor
Annotation Symbol
CG5627
CG5627
Paralogues
No paralogues
No paralogues
| Adult Male | Adult Female | Male v. Female | Larval | |||||
|---|---|---|---|---|---|---|---|---|
| Tissue | FPKM | Enrichment | FPKM | Enrichment | M/F | p value | FPKM | Enrichment |
| Head | 17 ± 0.8 | 4.1 | 15 ± 3.3 | 7.7 | 1.10 | n.s. | ||
| Eye | 22 ± 5.2 | 5.4 | 17 ± 1.8 | 8.7 | 1.30 | n.s. | ||
| Brain / CNS | 25 ± 0.2 | 5.9 | 22 ± 2.7 | 11 | 1.11 | n.s. | 4.7 ± 0.6 | 2.3 |
| Thoracicoabdominal ganglion | 17 ± 2.2 | 4.0 | 18 ± 0.3 | 9.1 | 0.92 | n.s. | ||
| Crop | 0.3 ± 0.1 | 0.1 | 0.3 ± 0.1 | N.A. | 1.00 | n.s. | ||
| Midgut | 0.5 ± 0.2 | 0.1 | 0.1 ± 0.0 | N.A. | 1.00 | n.s. | 0.1 ± 0.0 | N.A. |
| Hindgut | 1.0 ± 0.1 | 0.2 | 0.4 ± 0.0 | N.A. | 1.00 | p < 0.01 | 0.1 ± 0.0 | N.A. |
| Malpighian Tubules | 0.7 ± 0.1 | 0.2 | 0.2 ± 0.1 | N.A. | 1.00 | p < 0.01 | 0.3 ± 0.2 | N.A. |
| Rectal pad | 0.4 ± 0.0 | 0.1 | 0.1 ± 0.0 | N.A. | 1.00 | p < 0.05 | ||
| Salivary gland | 0.6 ± 0.2 | 0.1 | 0.3 ± 0.0 | N.A. | 1.00 | n.s. | 0.4 ± 0.1 | N.A. |
| Fat body | 0.3 ± 0.1 | 0.1 | 0.2 ± 0.1 | N.A. | 1.00 | n.s. | 8.5 ± 2.2 | 4.2 |
| Heart | 0.2 ± 0.1 | 0.0 | 0.2 ± 0.0 | N.A. | 1.00 | n.s. | ||
| Trachea | 0.1 ± 0.0 | N.A. | ||||||
| Ovary | 0.2 ± 0.0 | N.A. | ||||||
| Virgin Spermatheca | 0.0 ± 0.0 | N.A. | ||||||
| Mated Spermatheca | 0.1 ± 0.1 | N.A. | ||||||
| Testis | 0.2 ± 0.0 | 0.0 | ||||||
| Accessory glands | 0.0 ± 0.0 | 0.0 | ||||||
| Carcass | 0.9 ± 0.4 | 0.2 | 0.7 ± 0.3 | N.A. | 1.00 | n.s. | 0.3 ± 0.1 | N.A. |
| Garland cells | 0.8 ± 0.0 | N.A. | ||||||
| Whole body | 4.2 ± 0.4 | 1.0 ± 0.0 | 2.1 | p < 0.01 | 0.7 ± 0.1 | |||
Rotate to see Transcript Table
| Transcript | Male | Female | Larval | ||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Name | ID | Hd | Ey | Br | Tg | Cr | Mg | Hg | Tu | Rp | Sg | Fb | Ht | Ts | Ag | Cs | Hd | Ey | Br | Tg | Cr | Mg | Hg | Tu | Rp | Sg | Fb | Ht | Ov | Vs | Ms | Cs | Ns | Mg | Hg | Tu | Sg | Fb | Tr | Cs | Ga |
| RC | FBtr0307207 | ||||||||||||||||||||||||||||||||||||||||
| RD | FBtr0307208 | ||||||||||||||||||||||||||||||||||||||||
| RE | FBtr0307209 | ||||||||||||||||||||||||||||||||||||||||
| RF | FBtr0307210 | ||||||||||||||||||||||||||||||||||||||||
| RG | FBtr0330400 | ||||||||||||||||||||||||||||||||||||||||
| RH | FBtr0330401 | ||||||||||||||||||||||||||||||||||||||||
*Tissue Comparability:
See Docs for info on the chemistry used to sequence different tissues.
See Docs for info on the chemistry used to sequence different tissues.