FlyAtlas 2 – Gene
For a particular Drosophila gene, find the pattern of expression in different tissues.
 
Gene Symbol (e.g. vkg) — start typing, then select from the autosuggest menu
Gene Name (e.g. viking)
Annotation Symbol (e.g. CG16858)
Gene ID (e.g. FBgn0016075)
Transcript ID (e.g. FBtr0079036)

Gene:

Symbol
shn
Name
schnurri
Annotation Symbol
CG7734
FlyBase ID
FBgn0003396
Paralogues
Paralogues(s)
link out
SDs   Whole Body   Male v. Female
Gene FPKMs and Enrichments 
Adult MaleAdult FemaleMale v. FemaleLarval
TissueFPKMEnrichmentFPKMEnrichmentM/Fp valueFPKMEnrichment
Head8.0 ± 1.31.18.0 ± 1.41.41.00n.s.  
Eye7.8 ± 1.31.17.2 ± 0.31.21.08n.s.  
Brain / CNS3.0 ± 0.20.42.9 ± 0.30.51.01n.s.2.5 ± 0.40.9
Thoracicoabdominal ganglion4.2 ± 0.40.64.2 ± 0.30.70.98n.s.  
Crop9.2 ± 0.51.28.7 ± 2.61.51.06n.s.  
Midgut14 ± 3.01.98.1 ± 1.51.41.77n.s.5.6 ± 0.82.0
Hindgut7.0 ± 0.80.98.2 ± 1.41.40.85n.s.4.3 ± 0.31.5
Malpighian Tubules13 ± 3.11.712 ± 4.62.01.08n.s.5.2 ± 0.91.8
Rectal pad5.2 ± 0.20.74.3 ± 0.40.71.23n.s.  
Salivary gland8.1 ± 0.21.16.5 ± 0.71.11.25n.s.4.2 ± 0.31.5
Fat body11 ± 1.41.513 ± 0.82.20.88n.s.8.1 ± 1.22.8
Heart8.8 ± 3.11.211 ± 4.21.80.83n.s.  
Trachea      5.9 ± 1.32.1
Ovary  5.3 ± 0.30.9    
Virgin Spermatheca  14 ± 0.72.3    
Mated Spermatheca  14 ± 0.62.3    
Testis4.8 ± 1.90.7      
Accessory glands4.6 ± 1.00.6      
Carcass5.3 ± 0.60.76.4 ± 0.61.10.83n.s.3.7 ± 1.11.3
Garland cells      8.9 ± 0.53.1
Whole body7.4 ± 0.45.9 ± 1.11.26n.s.2.9 ± 0.7
download
Rotate to see Transcript Table
TranscriptMaleFemaleLarval
NameIDHdEyBrTgCrMgHgTuRpSgFbHtTsAgCsHdEyBrTgCrMgHgTuRpSgFbHtOvVsMsCsNsMgHgTuSgFbTrCsGa
RAFBtr0088098
RBFBtr0088099
RCFBtr0088100
RDFBtr0088101
REFBtr0330619
download
*Tissue Comparability: See Docs for info on the chemistry used to sequence different tissues.
WARNING: Transcript Ambiguity for this Gene!
Because FlyBase assigns a unique transcript name and identifier for each unique protein, the rare cases in which such proteins result from alternative translation of the same mRNA give rise to situations in which there are two or more different identifiers for the same physical transcript. RNAseq analysis can only deal with unique sequences, and in such cases arbitrarily assigns the data from a sequence to one of the different transcript identifiers. The result is that some named transcripts will be missing, or data for some transcripts will actually include that for others. In the case of gene FBgn0003396 the situation is:

No data for FBtr0330620 — included in FBtr0088101: Alternative Stop codons (readthrough)

*** More extensive information about transcript ambiguity and its implications can be found in the Docs ***