FlyAtlas 2 – Gene
For a particular Drosophila gene, find the pattern of expression in different tissues.
Gene Symbol (e.g. vkg) — start typing, then select from the autosuggest menu
Gene Name (e.g. viking)
Annotation Symbol (e.g. CG16858)
Gene ID (e.g. FBgn0016075)
Transcript ID (e.g. FBtr0079036)
Gene Name (e.g. viking)
Annotation Symbol (e.g. CG16858)
Gene ID (e.g. FBgn0016075)
Transcript ID (e.g. FBtr0079036)
Gene:
Symbol
snRNA:U4:39B
snRNA:U4:39B
Name
small nuclear RNA U4 at 39B
small nuclear RNA U4 at 39B
Annotation Symbol
CR31625
CR31625
Paralogues
No paralogues
No paralogues
| Adult Male | Adult Female | Male v. Female | Larval | |||||
|---|---|---|---|---|---|---|---|---|
| Tissue | FPKM | Enrichment | FPKM | Enrichment | M/F | p value | FPKM | Enrichment |
| Head | 48300 ± 12009 | 5.1 | 39730 ± 44185 | 3.4 | 1.22 | n.s. | ||
| Eye | 11377 ± 488 | 1.2 | 13695 ± 2391 | 1.2 | 0.83 | n.s. | ||
| Brain / CNS | 28479 ± 6031 | 3.0 | 37974 ± 11355 | 3.3 | 0.75 | n.s. | 7526 ± 2074 | 0.7 |
| Thoracicoabdominal ganglion | 17939 ± 12392 | 1.9 | 7785 ± 1654 | 0.7 | 2.3 | n.s. | ||
| Crop | 17573 ± 4946 | 1.8 | 14109 ± 1225 | 1.2 | 1.25 | n.s. | ||
| Midgut | 12190 ± 903 | 1.3 | 17168 ± 3749 | 1.5 | 0.71 | n.s. | 8630 ± 1046 | 0.9 |
| Hindgut | 19281 ± 6104 | 2.0 | 11099 ± 749 | 1.0 | 1.74 | n.s. | 7424 ± 1067 | 0.7 |
| Malpighian Tubules | 12667 ± 1473 | 1.3 | 16193 ± 4610 | 1.4 | 0.78 | n.s. | 7106 ± 233 | 0.7 |
| Rectal pad | 31564 ± 1523 | 3.3 | 26318 ± 2937 | 2.3 | 1.20 | n.s. | ||
| Salivary gland | 4854 ± 421 | 0.5 | 2728 ± 256 | 0.2 | 1.78 | n.s. | 6967 ± 886 | 0.7 |
| Fat body | 4574 ± 464 | 0.5 | 2531 ± 276 | 0.2 | 1.81 | p < 0.01 | 7472 ± 1304 | 0.7 |
| Heart | 3320 ± 1918 | 0.3 | 738 ± 517 | 0.1 | 4.5 | n.s. | ||
| Trachea | 11921 ± 1499 | 1.2 | ||||||
| Ovary | 7045 ± 4980 | 0.6 | ||||||
| Virgin Spermatheca | 3901 ± 467 | 0.3 | ||||||
| Mated Spermatheca | 3979 ± 815 | 0.3 | ||||||
| Testis | 6776 ± 3263 | 0.7 | ||||||
| Accessory glands | 22241 ± 2993 | 2.3 | ||||||
| Carcass | 19637 ± 9826 | 2.1 | 13191 ± 2109 | 1.1 | 1.49 | n.s. | 8789 ± 606 | 0.9 |
| Garland cells | 2825 ± 212 | 0.3 | ||||||
| Whole body | 9538 ± 2876 | 11632 ± 8141 | 0.82 | n.s. | 10055 ± 635 | |||
Rotate to see Transcript Table
| Transcript | Male | Female | Larval | ||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Name | ID | Hd | Ey | Br | Tg | Cr | Mg | Hg | Tu | Rp | Sg | Fb | Ht | Ts | Ag | Cs | Hd | Ey | Br | Tg | Cr | Mg | Hg | Tu | Rp | Sg | Fb | Ht | Ov | Vs | Ms | Cs | Ns | Mg | Hg | Tu | Sg | Fb | Tr | Cs | Ga |
| RA | FBtr0081489 | ||||||||||||||||||||||||||||||||||||||||
These data are for a snRNA (small nuclear RNA) that does not encode a protein.
Note that Some snRNAs are too small to be detected by RNAseq and therefore zero values for them will be false. (N.B. Data for Fat Body and Spermatheca may not be comparable with those from other tissues.)
Note that Some snRNAs are too small to be detected by RNAseq and therefore zero values for them will be false. (N.B. Data for Fat Body and Spermatheca may not be comparable with those from other tissues.)