FlyAtlas 2 – Gene
For a particular Drosophila gene, find the pattern of expression in different tissues.
Gene Symbol (e.g. vkg) — start typing, then select from the autosuggest menu
Gene Name (e.g. viking)
Annotation Symbol (e.g. CG16858)
Gene ID (e.g. FBgn0016075)
Transcript ID (e.g. FBtr0079036)
Gene Name (e.g. viking)
Annotation Symbol (e.g. CG16858)
Gene ID (e.g. FBgn0016075)
Transcript ID (e.g. FBtr0079036)
Gene:
Symbol
Lrch
Lrch
Name
Leucine-rich-repeats and calponin homology domain protein
Leucine-rich-repeats and calponin homology domain protein
Annotation Symbol
CG6860
CG6860
| Adult Male | Adult Female | Male v. Female | Larval | |||||
|---|---|---|---|---|---|---|---|---|
| Tissue | FPKM | Enrichment | FPKM | Enrichment | M/F | p value | FPKM | Enrichment |
| Head | 9.4 ± 0.5 | 1.6 | 8.5 ± 1.5 | 1.2 | 1.11 | n.s. | ||
| Eye | 12 ± 2.1 | 2.0 | 8.2 ± 0.9 | 1.1 | 1.46 | n.s. | ||
| Brain / CNS | 15 ± 0.9 | 2.6 | 13 ± 2.0 | 1.9 | 1.14 | n.s. | 19 ± 4.3 | 5.1 |
| Thoracicoabdominal ganglion | 13 ± 0.4 | 2.1 | 13 ± 1.1 | 1.8 | 0.96 | n.s. | ||
| Crop | 4.0 ± 0.1 | 0.7 | 3.6 ± 0.7 | 0.5 | 1.11 | n.s. | ||
| Midgut | 13 ± 2.8 | 2.2 | 9.7 ± 0.5 | 1.3 | 1.33 | n.s. | 9.8 ± 0.8 | 2.6 |
| Hindgut | 1.6 ± 0.2 | 0.3 | 1.8 ± 0.2 | 0.2 | 1.00 | n.s. | 1.1 ± 0.1 | 0.3 |
| Malpighian Tubules | 2.8 ± 1.2 | 0.5 | 2.5 ± 0.5 | 0.3 | 1.10 | n.s. | 1.1 ± 0.1 | 0.3 |
| Rectal pad | 1.1 ± 0.1 | 0.2 | 1.4 ± 0.0 | 0.2 | 1.00 | n.s. | ||
| Salivary gland | 3.4 ± 0.5 | 0.6 | 3.9 ± 1.5 | 0.5 | 0.88 | n.s. | 2.0 ± 0.4 | 0.5 |
| Fat body | 1.4 ± 0.2 | 0.2 | 1.2 ± 0.3 | 0.2 | 1.00 | n.s. | 2.0 ± 0.3 | 0.5 |
| Heart | 2.8 ± 1.1 | 0.5 | 4.2 ± 0.8 | 0.6 | 0.65 | n.s. | ||
| Trachea | 3.8 ± 0.5 | 1.0 | ||||||
| Ovary | 8.2 ± 0.2 | 1.1 | ||||||
| Virgin Spermatheca | 1.3 ± 0.2 | 0.2 | ||||||
| Mated Spermatheca | 2.0 ± 0.2 | 0.3 | ||||||
| Testis | 17 ± 1.0 | 2.8 | ||||||
| Accessory glands | 2.8 ± 0.2 | 0.5 | ||||||
| Carcass | 2.7 ± 0.5 | 0.5 | 3.2 ± 0.6 | 0.4 | 0.82 | n.s. | 3.7 ± 0.4 | 1.0 |
| Garland cells | 3.8 ± 1.5 | 1.0 | ||||||
| Whole body | 5.9 ± 0.3 | 7.2 ± 0.7 | 0.81 | n.s. | 3.7 ± 0.6 | |||
Rotate to see Transcript Table
| Transcript | Male | Female | Larval | ||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Name | ID | Hd | Ey | Br | Tg | Cr | Mg | Hg | Tu | Rp | Sg | Fb | Ht | Ts | Ag | Cs | Hd | Ey | Br | Tg | Cr | Mg | Hg | Tu | Rp | Sg | Fb | Ht | Ov | Vs | Ms | Cs | Ns | Mg | Hg | Tu | Sg | Fb | Tr | Cs | Ga |
| RA | FBtr0080968 | ||||||||||||||||||||||||||||||||||||||||
| RB | FBtr0080969 | ||||||||||||||||||||||||||||||||||||||||
| RC | FBtr0339797 | ||||||||||||||||||||||||||||||||||||||||
*Tissue Comparability:
See Docs for info on the chemistry used to sequence different tissues.
See Docs for info on the chemistry used to sequence different tissues.