FlyAtlas 2: The RNAseq-based atlas of Drosophila gene expression

Gene Symbol (e.g. vkg) — start typing, then select from the autosuggest menu
Gene Name (e.g. viking)
Annotation Symbol (e.g. CG16858)
Gene ID (e.g. FBgn0016075)
Transcript ID (e.g. FBtr0079036)

Gene:

Symbol
snoRNA:Psi18S-1389a

Name
snoRNA:Psi18S-1389a

Annotation Symbol
CR34556

FlyBase ID
FBgn0083046

Paralogues
No paralogues

SDs Whole Body Male v. Female

Gene FPKMs and Enrichments

	Adult Male		Adult Female		Male v. Female		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment	M/F	p value	FPKM	Enrichment
Head	1295 ± 339	3.3	1341 ± 1130	3.4	0.97	n.s.
Eye	90 ± 13	0.2	176 ± 9.7	0.4	0.51	n.s.
Brain / CNS	146 ± 25	0.4	181 ± 38	0.5	0.81	n.s.	214 ± 44	0.5
Thoracicoabdominal ganglion	187 ± 75	0.5	188 ± 25	0.5	0.99	n.s.
Crop	190 ± 112	0.5	308 ± 4.7	0.8	0.62	n.s.
Midgut	173 ± 29	0.4	638 ± 64	1.6	0.27	p < 0.01	204 ± 93	0.5
Hindgut	194 ± 56	0.5	173 ± 17	0.4	1.12	n.s.	213 ± 50	0.5
Malpighian Tubules	210 ± 147	0.5	714 ± 939	1.8	0.29	n.s.	138 ± 55	0.3
Rectal pad	245 ± 36	0.6	295 ± 71	0.7	0.83	n.s.
Salivary gland	77 ± 3.3	0.2	60 ± 4.2	0.2	1.28	n.s.	239 ± 28	0.6
Fat body	471 ± 108	1.2	1167 ± 332	2.9	0.40	n.s.	270 ± 23	0.6
Heart	717 ± 236	1.9	575 ± 363	1.4	1.25	n.s.
Trachea							419 ± 118	1.0
Ovary			293 ± 55	0.7
Virgin Spermatheca			600 ± 143	1.5
Mated Spermatheca			779 ± 203	1.9
Testis	103 ± 93	0.3
Accessory glands	448 ± 133	1.2
Carcass	201 ± 112	0.5	302 ± 35	0.8	0.67	n.s.	317 ± 36	0.8
Garland cells							553 ± 118	1.3

Whole body	387 ± 88		400 ± 83		0.97	n.s.	416 ± 28

Rotate to see Transcript Table

View in UCSC Genome Browser

Transcript FPKMs

Transcript		Male															Female																Larval
Name	ID	Hd	Ey	Br	Tg	Cr	Mg	Hg	Tu	Rp	Sg	Fb	Ht	Ts	Ag	Cs	Hd	Ey	Br	Tg	Cr	Mg	Hg	Tu	Rp	Sg	Fb	Ht	Ov	Vs	Ms	Cs	Ns	Mg	Hg	Tu	Sg	Fb	Tr	Cs	Ga
RA	FBtr0113525

These data are for a snoRNA (small nucleolar RNA) that does not encode a protein.
There are two main classes of snoRNAs: 1. CD class snoRNAs, involved in rRNA methylation, which are generally not detected by our techniques as they are too small, and 2. ACC class snoRNAs, involved in pseudouridylation, which are generally large enough to be detected. (N.B. Data for Fat Body and Spermatheca may not be comparable with those from other tissues.)