FlyAtlas 2: The RNAseq-based atlas of Drosophila gene expression

Gene Symbol (e.g. vkg) — start typing, then select from the autosuggest menu
Gene Name (e.g. viking)
Annotation Symbol (e.g. CG16858)
Gene ID (e.g. FBgn0016075)
Transcript ID (e.g. FBtr0079036)

Gene:

Symbol
RpL39

Name
Ribosomal protein L39

Annotation Symbol
CG3997

FlyBase ID
FBgn0023170

Paralogues
Paralogues(s)

SDs Whole Body Male v. Female

Gene FPKMs and Enrichments

	Adult Male		Adult Female		Male v. Female		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment	M/F	p value	FPKM	Enrichment
Head	9638 ± 2202	2.2	9745 ± 7821	0.9	0.99	n.s.
Eye	1439 ± 218	0.3	2452 ± 354	0.2	0.59	n.s.
Brain / CNS	850 ± 62	0.2	936 ± 176	0.1	0.91	n.s.	1795 ± 108	0.7
Thoracicoabdominal ganglion	1672 ± 108	0.4	1510 ± 140	0.1	1.11	n.s.
Crop	2165 ± 2.9	0.5	2415 ± 70	0.2	0.90	n.s.
Midgut	2043 ± 111	0.5	3000 ± 482	0.3	0.68	n.s.	2465 ± 243	0.9
Hindgut	1928 ± 128	0.4	2584 ± 188	0.2	0.75	p < 0.05	2668 ± 663	1.0
Malpighian Tubules	4453 ± 3771	1.0	9090 ± 11230	0.9	0.49	n.s.	2052 ± 236	0.8
Rectal pad	3364 ± 346	0.8	3378 ± 379	0.3	1.00	n.s.
Salivary gland	2165 ± 172	0.5	1903 ± 186	0.2	1.14	n.s.	3757 ± 44	1.4
Fat body	2208 ± 219	0.5	1567 ± 116	0.2	1.41	p < 0.05	4820 ± 514	1.8
Heart	1791 ± 681	0.4	1311 ± 424	0.1	1.37	n.s.
Trachea							2574 ± 91	1.0
Ovary			8638 ± 2799	0.8
Virgin Spermatheca			842 ± 143	0.1
Mated Spermatheca			702 ± 51	0.1
Testis	3394 ± 2344	0.8
Accessory glands	4260 ± 397	1.0
Carcass	1835 ± 435	0.4	2843 ± 450	0.3	0.65	p < 0.05	3487 ± 578	1.3
Garland cells							453 ± 68	0.2

Whole body	4475 ± 1775		10404 ± 3597		0.43	n.s.	2697 ± 205

Rotate to see Transcript Table

View in UCSC Genome Browser

Transcript FPKMs

Transcript		Male															Female																Larval
Name	ID	Hd	Ey	Br	Tg	Cr	Mg	Hg	Tu	Rp	Sg	Fb	Ht	Ts	Ag	Cs	Hd	Ey	Br	Tg	Cr	Mg	Hg	Tu	Rp	Sg	Fb	Ht	Ov	Vs	Ms	Cs	Ns	Mg	Hg	Tu	Sg	Fb	Tr	Cs	Ga
RA	FBtr0072185

*Tissue Comparability: See Docs for info on the chemistry used to sequence different tissues.