FlyAtlas 2 – Gene
For a particular Drosophila gene, find the pattern of expression in different tissues.
 
Gene Symbol (e.g. vkg) — start typing, then select from the autosuggest menu
Gene Name (e.g. viking)
Annotation Symbol (e.g. CG16858)
Gene ID (e.g. FBgn0016075)
Transcript ID (e.g. FBtr0079036)

Gene:

Symbol
svp
Name
seven up
Annotation Symbol
CG11502
FlyBase ID
FBgn0003651
Paralogues
Paralogues(s)
link out
SDs   Whole Body   Male v. Female
Gene FPKMs and Enrichments 
Adult MaleAdult FemaleMale v. FemaleLarval
TissueFPKMEnrichmentFPKMEnrichmentM/Fp valueFPKMEnrichment
Head10.0 ± 1.61.015 ± 1.94.00.66p < 0.05  
Eye9.7 ± 1.60.914 ± 0.23.70.68n.s.  
Brain / CNS4.6 ± 0.00.45.2 ± 0.71.40.89n.s.4.1 ± 0.70.9
Thoracicoabdominal ganglion6.5 ± 0.10.66.8 ± 0.41.80.95n.s.  
Crop12 ± 0.91.28.7 ± 2.42.31.40n.s.  
Midgut0.1 ± 0.20.00.0 ± 0.00.01.00n.s.0.1 ± 0.10.0
Hindgut2.7 ± 0.10.34.1 ± 0.61.10.65n.s.0.3 ± 0.10.1
Malpighian Tubules1.8 ± 0.20.21.7 ± 0.60.51.00n.s.2.6 ± 0.40.6
Rectal pad15 ± 0.31.59.9 ± 1.62.61.56n.s.  
Salivary gland3.3 ± 0.00.31.1 ± 0.30.31.64n.s.1.7 ± 0.40.4
Fat body23 ± 1.52.228 ± 3.97.20.81n.s.42 ± 4.89.4
Heart25 ± 6.12.425 ± 126.40.99n.s.  
Trachea      1.1 ± 0.30.2
Ovary  0.1 ± 0.10.0    
Virgin Spermatheca  8.0 ± 0.52.1    
Mated Spermatheca  13 ± 3.93.3    
Testis2.9 ± 0.40.3      
Accessory glands0.4 ± 0.10.0      
Carcass16 ± 1.51.619 ± 1.45.00.86n.s.1.2 ± 0.20.3
Garland cells      3.5 ± 1.70.8
Whole body10 ± 1.33.8 ± 0.32.7p < 0.054.4 ± 0.7
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Rotate to see Transcript Table
TranscriptMaleFemaleLarval
NameIDHdEyBrTgCrMgHgTuRpSgFbHtTsAgCsHdEyBrTgCrMgHgTuRpSgFbHtOvVsMsCsNsMgHgTuSgFbTrCsGa
RAFBtr0082563
RBFBtr0082564
RCFBtr0082562
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*Tissue Comparability: See Docs for info on the chemistry used to sequence different tissues.
WARNING: Transcript Ambiguity for this Gene!
Because FlyBase assigns a unique transcript name and identifier for each unique protein, the rare cases in which such proteins result from alternative translation of the same mRNA give rise to situations in which there are two or more different identifiers for the same physical transcript. RNAseq analysis can only deal with unique sequences, and in such cases arbitrarily assigns the data from a sequence to one of the different transcript identifiers. The result is that some named transcripts will be missing, or data for some transcripts will actually include that for others. In the case of gene FBgn0003651 the situation is:

No data for FBtr0479795 — included in FBtr0082564: Alternative Stop codons (readthrough)

No data for FBtr0331183 — included in FBtr0082564: Alternative Stop codons (readthrough)

*** More extensive information about transcript ambiguity and its implications can be found in the Docs ***