FlyAtlas 2 – Gene
For a particular Drosophila gene, find the pattern of expression in different tissues.
 
Gene Symbol (e.g. vkg) — start typing, then select from the autosuggest menu
Gene Name (e.g. viking)
Annotation Symbol (e.g. CG16858)
Gene ID (e.g. FBgn0016075)
Transcript ID (e.g. FBtr0079036)

Gene:

Symbol
Jra
Name
Jun-related antigen
Annotation Symbol
CG2275
FlyBase ID
FBgn0001291
Paralogues
Paralogues(s)
link out
SDs   Whole Body   Male v. Female
Gene FPKMs and Enrichments 
Adult MaleAdult FemaleMale v. FemaleLarval
TissueFPKMEnrichmentFPKMEnrichmentM/Fp valueFPKMEnrichment
Head14 ± 3.41.314 ± 1.41.31.02n.s.  
Eye15 ± 0.71.315 ± 0.31.40.99n.s.  
Brain / CNS9.9 ± 1.10.99.6 ± 0.70.91.03n.s.6.8 ± 0.70.5
Thoracicoabdominal ganglion15 ± 0.41.316 ± 0.21.50.93n.s.  
Crop19 ± 1.21.729 ± 4.12.70.68n.s.  
Midgut24 ± 3.12.129 ± 3.12.80.82n.s.25 ± 1.61.8
Hindgut19 ± 1.11.721 ± 0.52.00.91n.s.14 ± 4.21.0
Malpighian Tubules18 ± 7.41.626 ± 122.50.68n.s.18 ± 4.31.3
Rectal pad17 ± 0.91.522 ± 2.92.10.79n.s.  
Salivary gland19 ± 0.31.715 ± 0.31.41.28p < 0.0112 ± 1.80.9
Fat body6.7 ± 0.60.65.2 ± 2.00.51.29n.s.9.2 ± 1.70.7
Heart12 ± 1.91.013 ± 1.01.20.88n.s.  
Trachea      15 ± 0.31.1
Ovary  11 ± 1.01.1    
Virgin Spermatheca  8.8 ± 1.90.8    
Mated Spermatheca  8.5 ± 0.80.8    
Testis26 ± 3.22.3      
Accessory glands13 ± 0.41.2      
Carcass13 ± 1.11.113 ± 1.71.21.00n.s.9.5 ± 2.80.7
Garland cells      10 ± 1.50.8
Whole body11 ± 0.911 ± 1.31.06n.s.14 ± 1.0
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Rotate to see Transcript Table
TranscriptMaleFemaleLarval
NameIDHdEyBrTgCrMgHgTuRpSgFbHtTsAgCsHdEyBrTgCrMgHgTuRpSgFbHtOvVsMsCsNsMgHgTuSgFbTrCsGa
RAFBtr0088411
RBFBtr0088410
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*Tissue Comparability: See Docs for info on the chemistry used to sequence different tissues.
WARNING: Transcript Ambiguity for this Gene!
Because FlyBase assigns a unique transcript name and identifier for each unique protein, the rare cases in which such proteins result from alternative translation of the same mRNA give rise to situations in which there are two or more different identifiers for the same physical transcript. RNAseq analysis can only deal with unique sequences, and in such cases arbitrarily assigns the data from a sequence to one of the different transcript identifiers. The result is that some named transcripts will be missing, or data for some transcripts will actually include that for others. In the case of gene FBgn0001291 the situation is:

No data for FBtr0330606 — included in FBtr0088411: Alternative Stop codons (readthrough)

*** More extensive information about transcript ambiguity and its implications can be found in the Docs ***