FlyAtlas 2 – Gene
For a particular Drosophila gene, find the pattern of expression in different tissues.
 
Gene Symbol (e.g. vkg) — start typing, then select from the autosuggest menu
Gene Name (e.g. viking)
Annotation Symbol (e.g. CG16858)
Gene ID (e.g. FBgn0016075)
Transcript ID (e.g. FBtr0079036)

Gene:

Symbol
tim
Name
timeless
Annotation Symbol
CG3234
FlyBase ID
FBgn0014396
Paralogues
Paralogues(s)
link out
SDs   Whole Body   Male v. Female
Gene FPKMs and Enrichments 
Adult MaleAdult FemaleMale v. FemaleLarval
TissueFPKMEnrichmentFPKMEnrichmentM/Fp valueFPKMEnrichment
Head33 ± 272.913 ± 122.82.5n.s.  
Eye118 ± 611044 ± 129.62.7n.s.  
Brain / CNS6.4 ± 0.50.67.0 ± 0.51.50.92n.s.0.2 ± 0.0N.A.
Thoracicoabdominal ganglion9.3 ± 0.10.811 ± 1.12.40.82n.s.  
Crop38 ± 183.318 ± 5.73.92.1n.s.  
Midgut37 ± 6.83.219 ± 2.24.21.91p < 0.051.5 ± 0.5N.A.
Hindgut17 ± 6.11.512 ± 2.22.51.44n.s.0.1 ± 0.1N.A.
Malpighian Tubules33 ± 5.62.916 ± 3.73.52.1p < 0.050.1 ± 0.0N.A.
Rectal pad15 ± 3.11.314 ± 0.63.11.09n.s.  
Salivary gland80 ± 8.27.033 ± 5.17.22.4p < 0.050.1 ± 0.0N.A.
Fat body32 ± 3.12.89.4 ± 1.32.03.5p < 0.011.1 ± 0.4N.A.
Heart24 ± 2.72.19.5 ± 5.02.12.5p < 0.05  
Trachea      0.0 ± 0.0N.A.
Ovary  2.8 ± 0.40.6    
Virgin Spermatheca  17 ± 3.83.6    
Mated Spermatheca  20 ± 0.74.4    
Testis3.3 ± 0.60.3      
Accessory glands31 ± 4.52.7      
Carcass18 ± 4.21.67.9 ± 0.61.72.3n.s.0.1 ± 0.0N.A.
Garland cells      0.1 ± 0.2N.A.
Whole body12 ± 2.64.6 ± 1.12.5p < 0.050.6 ± 0.2
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Rotate to see Transcript Table
TranscriptMaleFemaleLarval
NameIDHdEyBrTgCrMgHgTuRpSgFbHtTsAgCsHdEyBrTgCrMgHgTuRpSgFbHtOvVsMsCsNsMgHgTuSgFbTrCsGa
RLFBtr0333252
RMFBtr0333253
RNFBtr0333254
ROFBtr0333255
RPFBtr0333256
RRFBtr0333258
RSFBtr0333259
RTFBtr0445397
RUFBtr0480508
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*Tissue Comparability: See Docs for info on the chemistry used to sequence different tissues.
WARNING: Transcript Ambiguity for this Gene!
Because FlyBase assigns a unique transcript name and identifier for each unique protein, the rare cases in which such proteins result from alternative translation of the same mRNA give rise to situations in which there are two or more different identifiers for the same physical transcript. RNAseq analysis can only deal with unique sequences, and in such cases arbitrarily assigns the data from a sequence to one of the different transcript identifiers. The result is that some named transcripts will be missing, or data for some transcripts will actually include that for others. In the case of gene FBgn0014396 the situation is:

No data for FBtr0077567 — included in FBtr0445397: Alternative Start codons in same reading frame

*** More extensive information about transcript ambiguity and its implications can be found in the Docs ***