FlyAtlas 2 – Gene
For a particular Drosophila gene, find the pattern of expression in different tissues.
 
Gene Symbol (e.g. vkg) — start typing, then select from the autosuggest menu
Gene Name (e.g. viking)
Annotation Symbol (e.g. CG16858)
Gene ID (e.g. FBgn0016075)
Transcript ID (e.g. FBtr0079036)

Gene:

Symbol
px
Name
plexus
Annotation Symbol
CG4444
FlyBase ID
FBgn0003175
Paralogues
Paralogues(s)
link out
SDs   Whole Body   Male v. Female
Gene FPKMs and Enrichments 
Adult MaleAdult FemaleMale v. FemaleLarval
TissueFPKMEnrichmentFPKMEnrichmentM/Fp valueFPKMEnrichment
Head11 ± 0.61.39.0 ± 1.11.81.20n.s.  
Eye7.7 ± 0.50.96.3 ± 0.21.21.23n.s.  
Brain / CNS14 ± 0.61.612 ± 2.02.41.16n.s.7.3 ± 1.21.8
Thoracicoabdominal ganglion8.4 ± 1.51.09.5 ± 0.01.90.88n.s.  
Crop5.8 ± 0.50.74.7 ± 1.60.91.22n.s.  
Midgut16 ± 1.21.911 ± 1.52.31.40p < 0.057.3 ± 1.41.8
Hindgut8.5 ± 1.01.09.0 ± 1.51.80.95n.s.5.0 ± 1.01.2
Malpighian Tubules11 ± 0.91.39.1 ± 0.81.81.18n.s.6.3 ± 1.41.5
Rectal pad6.6 ± 0.30.86.4 ± 0.11.31.03n.s.  
Salivary gland10 ± 0.51.26.8 ± 0.81.31.51n.s.24 ± 2.05.9
Fat body16 ± 0.11.913 ± 1.42.61.18n.s.9.5 ± 0.22.3
Heart12 ± 2.21.513 ± 2.22.50.97n.s.  
Trachea      8.8 ± 0.82.2
Ovary  4.3 ± 0.20.9    
Virgin Spermatheca  10 ± 0.52.0    
Mated Spermatheca  10 ± 0.42.0    
Testis3.0 ± 0.60.4      
Accessory glands3.4 ± 0.90.4      
Carcass6.3 ± 1.00.85.8 ± 0.51.21.09n.s.3.5 ± 1.00.9
Garland cells      9.9 ± 0.92.4
Whole body8.4 ± 0.45.0 ± 0.31.66p < 0.014.1 ± 0.3
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Rotate to see Transcript Table
TranscriptMaleFemaleLarval
NameIDHdEyBrTgCrMgHgTuRpSgFbHtTsAgCsHdEyBrTgCrMgHgTuRpSgFbHtOvVsMsCsNsMgHgTuSgFbTrCsGa
RAFBtr0071838
RBFBtr0112820
RDFBtr0331941
REFBtr0331942
RFFBtr0479815
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*Tissue Comparability: See Docs for info on the chemistry used to sequence different tissues.
WARNING: Transcript Ambiguity for this Gene!
Because FlyBase assigns a unique transcript name and identifier for each unique protein, the rare cases in which such proteins result from alternative translation of the same mRNA give rise to situations in which there are two or more different identifiers for the same physical transcript. RNAseq analysis can only deal with unique sequences, and in such cases arbitrarily assigns the data from a sequence to one of the different transcript identifiers. The result is that some named transcripts will be missing, or data for some transcripts will actually include that for others. In the case of gene FBgn0003175 the situation is:

No data for FBtr0479816 — included in FBtr0479815: Alternative Stop codons (readthrough)

*** More extensive information about transcript ambiguity and its implications can be found in the Docs ***