FlyAtlas 2 – Gene
For a particular Drosophila gene, find the pattern of expression in different tissues.
 
Gene Symbol (e.g. vkg) — start typing, then select from the autosuggest menu
Gene Name (e.g. viking)
Annotation Symbol (e.g. CG16858)
Gene ID (e.g. FBgn0016075)

Gene:

Symbol
sqh
Name
spaghetti squash
Annotation Symbol
CG3595
FlyBase ID
FBgn0003514
link out
SDs   Whole Body   Male v. Female
Gene FPKMs and Enrichments 
Adult MaleAdult FemaleMale v. FemaleLarval
TissueFPKMEnrichmentFPKMEnrichmentM/Fp valueFPKMEnrichment
Head46 ± 2.21.148 ± 9.71.20.95n.s.  
Eye62 ± 2.01.460 ± 0.31.41.04n.s.  
Brain / CNS22 ± 0.80.523 ± 0.80.50.96n.s.41 ± 3.30.5
Thoracicoabdominal ganglion29 ± 4.10.735 ± 0.20.80.81n.s.  
Crop72 ± 2.31.6102 ± 162.40.71n.s.  
Midgut83 ± 161.9105 ± 102.50.79n.s.168 ± 171.9
Hindgut64 ± 2.01.564 ± 3.01.51.00n.s.89 ± 381.0
Malpighian Tubules59 ± 221.481 ± 261.90.74n.s.65 ± 4.80.7
Fat body11 ± 0.90.39.4 ± 3.20.21.20n.s.33 ± 7.00.4
Salivary gland66 ± 6.61.550 ± 3.01.21.32n.s.244 ± 352.7
Heart32 ± 4.20.731 ± 8.30.71.05n.s.  
Trachea      93 ± 291.0
Ovary  37 ± 2.40.9    
Virgin Spermatheca  20 ± 1.10.5    
Mated Spermatheca  25 ± 4.10.6    
Testis54 ± 5.31.2      
Accessory glands60 ± 5.71.4      
Carcass31 ± 1.70.733 ± 2.50.80.96n.s.40 ± 8.60.4
Rectal pad77 ± 2.11.887 ± 4.62.10.88n.s.  
Garland cells      55 ± 7.40.6
Whole body44 ± 3.742 ± 3.51.04n.s.89 ± 13
download
Rotate to see Transcript Table
TranscriptMaleFemaleLarval
NameIDHdEyBrTgCrMgHgTuFbSgHtTsAgCsRpHdEyBrTgCrMgHgTuFbSgHtOvVsMsCsRpNsMgHgTuFbSgTrCsGa
RAFBtr0070877
RBFBtr0339502
RCFBtr0339503
RDFBtr0339504
REFBtr0345294
download
*Tissue Comparability:
See Docs for info on the chemistry used to sequence different tissues.