FlyAtlas 2 – Gene
For a particular Drosophila gene, find the pattern of expression in different tissues.
 
Gene Symbol (e.g. vkg) — start typing, then select from the autosuggest menu
Gene Name (e.g. viking)
Annotation Symbol (e.g. CG16858)
Gene ID (e.g. FBgn0016075)
Transcript ID (e.g. FBtr0079036)

Gene:

Symbol
ctp
Name
cut up
Annotation Symbol
CG6998
FlyBase ID
FBgn0011760
Paralogues
Paralogues(s)
link out
SDs   Whole Body   Male v. Female
Gene FPKMs and Enrichments 
Adult MaleAdult FemaleMale v. FemaleLarval
TissueFPKMEnrichmentFPKMEnrichmentM/Fp valueFPKMEnrichment
Head73 ± 6.62.164 ± 8.11.61.14n.s.  
Eye88 ± 7.62.674 ± 3.81.91.19n.s.  
Brain / CNS83 ± 1.32.480 ± 132.01.04n.s.88 ± 3.31.6
Thoracicoabdominal ganglion113 ± 1.93.3110 ± 4.52.81.02n.s.  
Crop62 ± 5.01.867 ± 161.70.93n.s.  
Midgut63 ± 1.61.860 ± 3.71.51.05n.s.52 ± 3.40.9
Hindgut57 ± 5.31.767 ± 0.51.70.86n.s.61 ± 201.1
Malpighian Tubules69 ± 202.066 ± 121.71.06n.s.74 ± 161.3
Rectal pad76 ± 5.72.290 ± 2.92.30.84p < 0.05  
Salivary gland68 ± 1.82.053 ± 1.91.41.28p < 0.0585 ± 3.71.5
Fat body44 ± 7.61.334 ± 5.00.91.31n.s.72 ± 2.21.3
Heart47 ± 9.81.434 ± 250.91.39n.s.  
Trachea      76 ± 181.3
Ovary  48 ± 9.11.2    
Virgin Spermatheca  56 ± 161.4    
Mated Spermatheca  56 ± 9.11.4    
Testis70 ± 1.52.0      
Accessory glands99 ± 142.9      
Carcass52 ± 4.41.546 ± 8.11.21.12n.s.100 ± 351.8
Garland cells      52 ± 1.20.9
Whole body35 ± 2.839 ± 4.20.89n.s.57 ± 4.2
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Rotate to see Transcript Table
TranscriptMaleFemaleLarval
NameIDHdEyBrTgCrMgHgTuRpSgFbHtTsAgCsHdEyBrTgCrMgHgTuRpSgFbHtOvVsMsCsNsMgHgTuSgFbTrCsGa
RAFBtr0070706
RBFBtr0070704
RCFBtr0070707
REFBtr0307065
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*Tissue Comparability: See Docs for info on the chemistry used to sequence different tissues.
WARNING: Transcript Ambiguity for this Gene!
Because FlyBase assigns a unique transcript name and identifier for each unique protein, the rare cases in which such proteins result from alternative translation of the same mRNA give rise to situations in which there are two or more different identifiers for the same physical transcript. RNAseq analysis can only deal with unique sequences, and in such cases arbitrarily assigns the data from a sequence to one of the different transcript identifiers. The result is that some named transcripts will be missing, or data for some transcripts will actually include that for others. In the case of gene FBgn0011760 the situation is:

No data for FBtr0474174 — included in FBtr0070706: Alternative Stop codons (readthrough)

*** More extensive information about transcript ambiguity and its implications can be found in the Docs ***