FlyAtlas 2 – Gene
For a particular Drosophila gene, find the pattern of expression in different tissues.
 
Gene Symbol (e.g. vkg) — start typing, then select from the autosuggest menu
Gene Name (e.g. viking)
Annotation Symbol (e.g. CG16858)
Gene ID (e.g. FBgn0016075)
Transcript ID (e.g. FBtr0079036)

Gene:

Symbol
 Lim1
Name
 LIM homeobox 1
Annotation Symbol
 CG11354
FlyBase ID
FBgn0026411
Paralogues
 Paralogues(s)
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SDs   Whole Body   Male v. Female
Gene FPKMs and Enrichments 
Adult MaleAdult FemaleMale v. FemaleLarval
TissueFPKMEnrichmentFPKMEnrichmentM/Fp valueFPKMEnrichment
Head4.0 ± 0.81.74.1 ± 0.82.00.98n.s.  
Eye0.7 ± 0.20.30.7 ± 0.1N.A.1.00n.s.  
Brain / CNS8.8 ± 0.33.89.1 ± 1.64.50.97n.s.5.5 ± 0.42.8
Thoracicoabdominal ganglion6.3 ± 1.02.78.4 ± 0.54.20.75n.s.  
Crop0.1 ± 0.10.00.2 ± 0.1N.A.1.00n.s.  
Midgut0.0 ± 0.00.00.0 ± 0.0N.A.1.00n.s.0.1 ± 0.1N.A.
Hindgut0.0 ± 0.00.00.0 ± 0.0N.A.1.00n.s.0.0 ± 0.0N.A.
Malpighian Tubules0.1 ± 0.10.00.0 ± 0.0N.A.1.00n.s.0.0 ± 0.0N.A.
Rectal pad0.0 ± 0.00.00.1 ± 0.0N.A.1.00n.s.  
Salivary gland0.3 ± 0.00.10.1 ± 0.0N.A.1.00n.s.0.1 ± 0.1N.A.
Fat body0.5 ± 0.60.20.2 ± 0.1N.A.1.00n.s.0.0 ± 0.0N.A.
Heart0.1 ± 0.00.00.0 ± 0.1N.A.1.00n.s.  
Trachea      0.2 ± 0.1N.A.
Ovary  0.0 ± 0.0N.A.    
Virgin Spermatheca  39 ± 6.419    
Mated Spermatheca  38 ± 3.619    
Testis7.1 ± 1.43.1      
Accessory glands0.6 ± 0.10.2      
Carcass1.3 ± 0.10.60.6 ± 0.1N.A.1.00p < 0.011.4 ± 0.2N.A.
Garland cells      0.7 ± 0.8N.A.
Whole body2.3 ± 0.20.5 ± 0.11.15p < 0.010.6 ± 0.2
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View in UCSC Genome Browser
Transcript FPKMs 
TranscriptMaleFemaleLarval
NameIDHdEyBrTgCrMgHgTuRpSgFbHtTsAgCsHdEyBrTgCrMgHgTuRpSgFbHtOvVsMsCsNsMgHgTuSgFbTrCsGa
RAFBtr0071279
RBFBtr0331732
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*Tissue Comparability:
See Docs for info on the chemistry used to sequence different tissues.