FlyAtlas 2 – Gene
For a particular Drosophila gene, find the pattern of expression in different tissues.
 
Gene Symbol (e.g. vkg) — start typing, then select from the autosuggest menu
Gene Name (e.g. viking)
Annotation Symbol (e.g. CG16858)
Gene ID (e.g. FBgn0016075)
Transcript ID (e.g. FBtr0079036)

Gene:

Symbol
Pop2
Annotation Symbol
CG5684
FlyBase ID
FBgn0036239
Paralogues
No paralogues
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SDs   Whole Body   Male v. Female
Gene FPKMs and Enrichments 
Adult MaleAdult FemaleMale v. FemaleLarval
TissueFPKMEnrichmentFPKMEnrichmentM/Fp valueFPKMEnrichment
Head14 ± 1.30.714 ± 1.60.80.98n.s.  
Eye17 ± 1.10.815 ± 0.70.81.13n.s.  
Brain / CNS18 ± 1.20.916 ± 1.90.91.08n.s.21 ± 2.01.6
Thoracicoabdominal ganglion13 ± 1.30.716 ± 0.60.90.82n.s.  
Crop12 ± 0.20.611 ± 4.20.61.03n.s.  
Midgut14 ± 0.20.714 ± 1.30.80.99n.s.11 ± 0.70.8
Hindgut14 ± 1.00.716 ± 0.30.90.83p < 0.0515 ± 5.91.1
Malpighian Tubules13 ± 1.30.713 ± 2.30.71.00n.s.14 ± 3.61.0
Rectal pad8.6 ± 0.40.49.3 ± 0.90.50.92n.s.  
Salivary gland15 ± 1.60.815 ± 3.00.81.05n.s.19 ± 1.81.4
Fat body8.9 ± 3.70.47.9 ± 1.60.41.12n.s.18 ± 1.81.3
Heart13 ± 1.30.618 ± 1.61.00.70p < 0.05  
Trachea      14 ± 0.51.1
Ovary  25 ± 1.51.3    
Virgin Spermatheca  9.8 ± 0.60.5    
Mated Spermatheca  8.7 ± 0.30.5    
Testis120 ± 7.36.0      
Accessory glands18 ± 1.40.9      
Carcass13 ± 1.20.713 ± 0.50.71.02n.s.15 ± 4.11.1
Garland cells      13 ± 2.91.0
Whole body20 ± 0.819 ± 1.41.06n.s.14 ± 1.2
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Rotate to see Transcript Table
TranscriptMaleFemaleLarval
NameIDHdEyBrTgCrMgHgTuRpSgFbHtTsAgCsHdEyBrTgCrMgHgTuRpSgFbHtOvVsMsCsNsMgHgTuSgFbTrCsGa
RBFBtr0076059
RCFBtr0076060
RDFBtr0300272
REFBtr0344758
RGFBtr0479823
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*Tissue Comparability: See Docs for info on the chemistry used to sequence different tissues.
WARNING: Transcript Ambiguity for this Gene!
Because FlyBase assigns a unique transcript name and identifier for each unique protein, the rare cases in which such proteins result from alternative translation of the same mRNA give rise to situations in which there are two or more different identifiers for the same physical transcript. RNAseq analysis can only deal with unique sequences, and in such cases arbitrarily assigns the data from a sequence to one of the different transcript identifiers. The result is that some named transcripts will be missing, or data for some transcripts will actually include that for others. In the case of gene FBgn0036239 the situation is:

No data for FBtr0076058 — included in FBtr0479823: Alternative Stop codons (readthrough)

*** More extensive information about transcript ambiguity and its implications can be found in the Docs ***