FlyAtlas 2 – Gene
For a particular Drosophila gene, find the pattern of expression in different tissues.
Gene Symbol (e.g. vkg) — start typing, then select from the autosuggest menu
Gene Name (e.g. viking)
Annotation Symbol (e.g. CG16858)
Gene ID (e.g. FBgn0016075)
Gene Name (e.g. viking)
Annotation Symbol (e.g. CG16858)
Gene ID (e.g. FBgn0016075)
Gene:
Symbol
SMC1
SMC1
Name
Structural maintenance of chromosomes 1
Structural maintenance of chromosomes 1
Annotation Symbol
CG6057
CG6057
| Adult Male | Adult Female | Male v. Female | Larval | |||||
|---|---|---|---|---|---|---|---|---|
| Tissue | FPKM | Enrichment | FPKM | Enrichment | M/F | p value | FPKM | Enrichment |
| Head | 5.0 ± 0.1 | 1.2 | 5.1 ± 1.2 | 0.6 | 0.98 | n.s. | ||
| Eye | 6.4 ± 0.4 | 1.6 | 5.8 ± 0.5 | 0.7 | 1.12 | n.s. | ||
| Brain / CNS | 7.9 ± 0.5 | 1.9 | 6.9 ± 0.8 | 0.8 | 1.14 | n.s. | 15 ± 1.8 | 3.0 |
| Thoracicoabdominal ganglion | 5.7 ± 0.8 | 1.4 | 6.3 ± 0.2 | 0.7 | 0.91 | n.s. | ||
| Crop | 6.0 ± 0.4 | 1.5 | 4.2 ± 0.7 | 0.5 | 1.42 | n.s. | ||
| Midgut | 6.8 ± 0.4 | 1.7 | 4.1 ± 0.2 | 0.5 | 1.65 | p < 0.01 | 5.0 ± 0.4 | 1.0 |
| Hindgut | 5.7 ± 0.4 | 1.4 | 6.6 ± 0.3 | 0.8 | 0.87 | p < 0.05 | 3.4 ± 0.9 | 0.7 |
| Malpighian Tubules | 5.4 ± 0.8 | 1.3 | 5.0 ± 0.8 | 0.6 | 1.09 | n.s. | 3.7 ± 0.3 | 0.7 |
| Fat body | 2.6 ± 0.3 | 0.6 | 3.5 ± 0.1 | 0.4 | 0.76 | p < 0.05 | 5.3 ± 0.4 | 1.0 |
| Salivary gland | 6.6 ± 0.1 | 1.6 | 7.4 ± 1.9 | 0.9 | 0.89 | n.s. | 8.9 ± 0.7 | 1.8 |
| Heart | 3.7 ± 1.0 | 0.9 | 4.3 ± 1.1 | 0.5 | 0.87 | n.s. | ||
| Trachea | 7.3 ± 0.3 | 1.5 | ||||||
| Ovary | 12 ± 0.7 | 1.3 | ||||||
| Virgin Spermatheca | 5.0 ± 0.1 | 0.6 | ||||||
| Mated Spermatheca | 4.9 ± 0.7 | 0.6 | ||||||
| Testis | 5.9 ± 0.4 | 1.5 | ||||||
| Accessory glands | 6.8 ± 0.4 | 1.7 | ||||||
| Carcass | 4.8 ± 0.8 | 1.2 | 5.4 ± 0.5 | 0.6 | 0.88 | n.s. | 5.0 ± 0.4 | 1.0 |
| Rectal pad | 4.9 ± 0.5 | 1.2 | 4.5 ± 0.2 | 0.5 | 1.09 | n.s. | ||
| Garland cells | 4.8 ± 0.3 | 0.9 | ||||||
| Whole body | 4.0 ± 0.2 | 8.7 ± 1.4 | 0.47 | p < 0.05 | 5.0 ± 0.4 | |||
Rotate to see Transcript Table
| Transcript | Male | Female | Larval | ||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Name | ID | Hd | Ey | Br | Tg | Cr | Mg | Hg | Tu | Fb | Sg | Ht | Ts | Ag | Cs | Rp | Hd | Ey | Br | Tg | Cr | Mg | Hg | Tu | Fb | Sg | Ht | Ov | Vs | Ms | Cs | Rp | Ns | Mg | Hg | Tu | Fb | Sg | Tr | Cs | Ga |
| RA | FBtr0084541 | ||||||||||||||||||||||||||||||||||||||||
*Tissue Comparability:
See Docs for info on the chemistry used to sequence different tissues.
See Docs for info on the chemistry used to sequence different tissues.