FlyAtlas 2 – Gene
For a particular Drosophila gene, find the pattern of expression in different tissues.
 
Gene Symbol (e.g. vkg) — start typing, then select from the autosuggest menu
Gene Name (e.g. viking)
Annotation Symbol (e.g. CG16858)
Gene ID (e.g. FBgn0016075)
Transcript ID (e.g. FBtr0079036)

Gene:

Symbol
CG42507
Annotation Symbol
CG42507
FlyBase ID
FBgn0260233
Paralogues
No paralogues
link out
SDs   Whole Body   Male v. Female
Gene FPKMs and Enrichments 
Adult MaleAdult FemaleMale v. FemaleLarval
TissueFPKMEnrichmentFPKMEnrichmentM/Fp valueFPKMEnrichment
Head8.2 ± 1.62.87.8 ± 1.13.91.05n.s.  
Eye6.1 ± 0.72.15.6 ± 0.82.81.09n.s.  
Brain / CNS17 ± 2.15.916 ± 2.87.81.09n.s.12 ± 3.36.2
Thoracicoabdominal ganglion7.7 ± 1.12.78.7 ± 0.64.30.89n.s.  
Crop0.5 ± 0.40.20.6 ± 0.2N.A.1.00n.s.  
Midgut1.1 ± 0.80.40.8 ± 0.2N.A.1.00n.s.0.1 ± 0.0N.A.
Hindgut0.6 ± 0.20.20.6 ± 0.1N.A.1.00n.s.0.4 ± 0.3N.A.
Malpighian Tubules1.3 ± 0.50.51.5 ± 0.4N.A.1.00n.s.0.0 ± 0.0N.A.
Rectal pad0.6 ± 0.10.20.6 ± 0.1N.A.1.00n.s.  
Salivary gland1.3 ± 0.10.51.3 ± 0.3N.A.1.00n.s.1.0 ± 0.1N.A.
Fat body0.4 ± 0.10.10.5 ± 0.3N.A.1.00n.s.0.5 ± 0.4N.A.
Heart0.3 ± 0.20.10.5 ± 0.2N.A.1.00n.s.  
Trachea      1.0 ± 0.2N.A.
Ovary  0.7 ± 0.7N.A.    
Virgin Spermatheca  0.2 ± 0.3N.A.    
Mated Spermatheca  0.7 ± 0.4N.A.    
Testis2.8 ± 1.61.0      
Accessory glands0.7 ± 0.10.2      
Carcass1.0 ± 0.30.30.8 ± 0.1N.A.1.00n.s.1.7 ± 0.3N.A.
Garland cells      1.2 ± 1.0N.A.
Whole body2.9 ± 0.31.5 ± 0.31.45p < 0.011.7 ± 0.0
download
Rotate to see Transcript Table
TranscriptMaleFemaleLarval
NameIDHdEyBrTgCrMgHgTuRpSgFbHtTsAgCsHdEyBrTgCrMgHgTuRpSgFbHtOvVsMsCsNsMgHgTuSgFbTrCsGa
RBFBtr0300642
download
*Tissue Comparability: See Docs for info on the chemistry used to sequence different tissues.
WARNING: Transcript Ambiguity for this Gene!
Because FlyBase assigns a unique transcript name and identifier for each unique protein, the rare cases in which such proteins result from alternative translation of the same mRNA give rise to situations in which there are two or more different identifiers for the same physical transcript. RNAseq analysis can only deal with unique sequences, and in such cases arbitrarily assigns the data from a sequence to one of the different transcript identifiers. The result is that some named transcripts will be missing, or data for some transcripts will actually include that for others. In the case of gene FBgn0260233 the situation is:

No data for FBtr0300641 — included in FBtr0075707 (gene FBgn0013263): Di- or poly-cistronic mRNA

Data for FBtr0300642 include those for FBtr0100445 (gene FBgn0013263): Di- or poly-cistronic mRNA

*** More extensive information about transcript ambiguity and its implications can be found in the Docs ***