FlyAtlas 2 – Gene
For a particular Drosophila gene, find the pattern of expression in different tissues.
Gene Symbol (e.g. vkg) — start typing, then select from the autosuggest menu
Gene Name (e.g. viking)
Annotation Symbol (e.g. CG16858)
Gene ID (e.g. FBgn0016075)
Transcript ID (e.g. FBtr0079036)
Gene Name (e.g. viking)
Annotation Symbol (e.g. CG16858)
Gene ID (e.g. FBgn0016075)
Transcript ID (e.g. FBtr0079036)
Gene:
Symbol
lncRNA:CR43493
lncRNA:CR43493
Name
long non-coding RNA:CR43493
long non-coding RNA:CR43493
Annotation Symbol
CR43493
CR43493
Paralogues
No paralogues
No paralogues
| Adult Male | Adult Female | Male v. Female | Larval | |||||
|---|---|---|---|---|---|---|---|---|
| Tissue | FPKM | Enrichment | FPKM | Enrichment | M/F | p value | FPKM | Enrichment |
| Head | 4.0 ± 0.2 | 2.0 | 3.7 ± 0.6 | 1.9 | 1.07 | n.s. | ||
| Eye | 2.6 ± 0.6 | 1.3 | 2.2 ± 0.3 | 1.1 | 1.14 | n.s. | ||
| Brain / CNS | 4.4 ± 0.3 | 2.2 | 5.1 ± 0.5 | 2.6 | 0.86 | n.s. | 1.9 ± 0.2 | 0.5 |
| Thoracicoabdominal ganglion | 3.5 ± 0.1 | 1.8 | 4.1 ± 0.9 | 2.0 | 0.87 | n.s. | ||
| Crop | 1.8 ± 0.1 | 0.9 | 1.5 ± 0.0 | N.A. | 1.00 | n.s. | ||
| Midgut | 6.5 ± 0.7 | 3.3 | 5.8 ± 0.4 | 2.9 | 1.12 | n.s. | 8.3 ± 1.3 | 2.3 |
| Hindgut | 2.2 ± 0.5 | 1.1 | 2.9 ± 0.6 | 1.4 | 0.76 | n.s. | 1.1 ± 0.1 | 0.3 |
| Malpighian Tubules | 3.8 ± 0.8 | 1.9 | 8.5 ± 0.3 | 4.2 | 0.45 | p < 0.01 | 4.4 ± 0.1 | 1.2 |
| Rectal pad | 1.1 ± 0.4 | 0.6 | 1.2 ± 0.0 | N.A. | 1.00 | n.s. | ||
| Salivary gland | 2.2 ± 0.2 | 1.1 | 2.4 ± 0.7 | 1.2 | 0.94 | n.s. | 2.4 ± 0.4 | 0.7 |
| Fat body | 1.7 ± 2.1 | 0.9 | 2.3 ± 2.1 | 1.2 | 0.86 | n.s. | 11 ± 2.6 | 2.9 |
| Heart | 1.5 ± 0.8 | 0.8 | 2.3 ± 1.6 | 1.2 | 0.87 | n.s. | ||
| Trachea | 1.8 ± 0.5 | 0.5 | ||||||
| Ovary | 0.6 ± 0.3 | N.A. | ||||||
| Virgin Spermatheca | 3.3 ± 0.7 | 1.6 | ||||||
| Mated Spermatheca | 3.8 ± 1.3 | 1.9 | ||||||
| Testis | 0.5 ± 0.1 | 0.2 | ||||||
| Accessory glands | 2.0 ± 0.3 | 1.0 | ||||||
| Carcass | 1.5 ± 0.5 | 0.8 | 2.2 ± 0.1 | 1.1 | 0.90 | n.s. | 2.5 ± 0.5 | 0.7 |
| Garland cells | 7.0 ± 1.2 | 2.0 | ||||||
| Whole body | 2.0 ± 0.2 | 1.8 ± 0.1 | 1.00 | n.s. | 3.6 ± 1.5 | |||
Rotate to see Transcript Table
| Transcript | Male | Female | Larval | ||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Name | ID | Hd | Ey | Br | Tg | Cr | Mg | Hg | Tu | Rp | Sg | Fb | Ht | Ts | Ag | Cs | Hd | Ey | Br | Tg | Cr | Mg | Hg | Tu | Rp | Sg | Fb | Ht | Ov | Vs | Ms | Cs | Ns | Mg | Hg | Tu | Sg | Fb | Tr | Cs | Ga |
| RA | FBtr0309524 | ||||||||||||||||||||||||||||||||||||||||
These data are for a lncRNA (Long intervening non-coding RNA) that does not encode a protein.
It is advisable to check any positive sequence reads in the UCSC Genome Browser (link above). (N.B. Data for Fat Body and Spermatheca may not be comparable with those from other tissues.)
It is advisable to check any positive sequence reads in the UCSC Genome Browser (link above). (N.B. Data for Fat Body and Spermatheca may not be comparable with those from other tissues.)