FlyAtlas 2 – Gene
For a particular Drosophila gene, find the pattern of expression in different tissues.
 
Gene Symbol (e.g. vkg) — start typing, then select from the autosuggest menu
Gene Name (e.g. viking)
Annotation Symbol (e.g. CG16858)
Gene ID (e.g. FBgn0016075)

Gene:

Symbol
mir-4940
Name
mir-4940 stem loop
Annotation Symbol
CR43541
FlyBase ID
FBgn0263556
link out
SDs   Whole Body   Male v. Female
MicroRNA RPMs and Enrichments 
Adult MaleAdult FemaleMale v. FemaleLarval
TissueRPMEnrichmentRPMEnrichmentM/Fp valueRPMEnrichment
Head15 ± 3.0n.a.16 ± 17n.a.0.94n.s.  
Eye13 ± 5.0n.a.18 ± 2.0n.a.0.72n.s.  
Brain / CNS75 ± 203.875 ± 133.81.00n.s.48 ± 142.4
Thoracicoabdominal ganglion34 ± 6.01.754 ± 3.02.70.63n.s.  
Crop0.0 ± 0.0n.a.0.0 ± 0.0n.a.1.00n.s.  
Midgut1.0 ± 1.0n.a.4.0 ± 3.0n.a.0.50n.s.13 ± 11n.a.
Hindgut0.0 ± 0.0n.a.0.0 ± 0.0n.a.1.00n.s.0.0 ± 0.0n.a.
Malpighian Tubules0.0 ± 0.0n.a.0.0 ± 0.0n.a.1.00n.s.1.0 ± 1.0n.a.
Fat body0.0 ± 0.0n.a.0.0 ± 0.0n.a.1.00n.s.0.0 ± 0.0n.a.
Salivary gland0.0 ± 0.0n.a.0.0 ± 0.0n.a.1.00n.s.2.0 ± 3.0n.a.
Trachea      0.0 ± 0.0n.a.
Ovary  0.0 ± 0.0n.a.    
Virgin Spermatheca  0.0 ± 0.0n.a.    
Mated Spermatheca  0.0 ± 0.0n.a.    
Testis0.0 ± 0.0n.a.      
Accessory glands0.0 ± 0.0n.a.      
Carcass13 ± 9.0n.a.10 ± 7.0n.a.1.30n.s.3.0 ± 5.0n.a.
Rectal pad0.0 ± 0.0n.a.5.0 ± 9.0n.a.0.40n.s.  
Whole body5.0 ± 2.05.0 ± 4.01.00n.s.7.0 ± 6.0
download
Rotate to see Transcript Table
TranscriptMaleFemaleLarval
NameIDHdEyBrTgCrMgHgTuFbSgHtTsAgCsRpHdEyBrTgCrMgHgTuFbSgHtOvVsMsCsRpNsMgHgTuFbSgTrCsGa
RAFBtr0309688
RBFBtr0309689
download
These data are for a microRNA.
The data were processed separately from those for other genes, and the units and heat-map ranges are different from them, as are the UCSC Genome Browser views (link above). Adult crop, salivary gland, fat body, spermatheca and heart were sequenced using a different chemistry from the other tissues. For certain microRNAs this results in a difference in which form (3′ or 5′ or both) is detected.