FlyAtlas 2 – Gene
For a particular Drosophila gene, find the pattern of expression in different tissues.
Gene Symbol (e.g. vkg) — start typing, then select from the autosuggest menu
Gene Name (e.g. viking)
Annotation Symbol (e.g. CG16858)
Gene ID (e.g. FBgn0016075)


Annotation Symbol
FlyBase ID
link out
SDs   Whole Body   Male v. Female
Gene FPKMs and Enrichments 
Adult MaleAdult FemaleMale v. FemaleLarval
TissueFPKMEnrichmentFPKMEnrichmentM/Fp valueFPKMEnrichment
Head0.3 ± 0.1N.A.0.4 ± 0.1N.A.1.00n.s.  
Eye0.5 ± 0.1N.A.0.3 ± 0.1N.A.1.00n.s.  
Brain / CNS0.7 ± 0.1N.A.0.6 ± 0.2N.A.1.00n.s.2.0 ± 0.21.0
Thoracicoabdominal ganglion0.4 ± 0.0N.A.0.8 ± 0.1N.A.1.00n.s.  
Crop0.2 ± 0.1N.A.0.2 ± 0.1N.A.1.00n.s.  
Midgut0.5 ± 0.4N.A.0.2 ± 0.2N.A.1.00n.s.0.6 ± 0.2N.A.
Hindgut0.1 ± 0.0N.A.0.1 ± 0.0N.A.1.00n.s.0.1 ± 0.1N.A.
Malpighian Tubules0.5 ± 0.2N.A.0.4 ± 0.0N.A.1.00n.s.0.0 ± 0.0N.A.
Fat body0.0 ± 0.0N.A.0.2 ± 0.2N.A.1.00n.s.0.1 ± 0.1N.A.
Salivary gland0.2 ± 0.1N.A.0.4 ± 0.1N.A.1.00n.s.0.1 ± 0.1N.A.
Heart0.4 ± 0.1N.A.0.5 ± 0.3N.A.1.00n.s.  
Trachea      0.5 ± 0.2N.A.
Ovary  0.2 ± 0.1N.A.    
Virgin Spermatheca  0.3 ± 0.2N.A.    
Mated Spermatheca  0.3 ± 0.1N.A.    
Testis0.2 ± 0.1N.A.      
Accessory glands1.5 ± 0.5N.A.      
Carcass0.2 ± 0.2N.A.0.3 ± 0.2N.A.1.00n.s.0.4 ± 0.1N.A.
Rectal pad0.1 ± 0.1N.A.0.2 ± 0.0N.A.1.00n.s.  
Garland cells      0.0 ± 0.0N.A.
Whole body0.2 ± 0.10.3 ± 0.11.00n.s.0.2 ± 0.2
Rotate to see Transcript Table
These data are for a ncRNA (non-coding RNA), i.e. an otherwise uncategorized RNA that does not encode a protein.
RNAs below a certain size are not detected by RNAseq and therefore zero values for them will be false. Some longer RNAs overlap highly-expressed protein genes. It is therefore advisable to check any positive sequence reads for ncRNAs in the UCSC Genome Browser (link above). (N.B. Data for Fat Body and Spermatheca may not be comparable with those from other tissues.)